Repair permissions was unceremoniously removed from OS X in El Capitan. This staple of the Mac gurus toolkit disappeared. There was no 21 gun salute, there was no flaming casket sent out to sea and there was no sweet, sweet wake to get drunk at. Instead, there was pain. There was pain, because when the button disappeared, the need did not. Need proof? If you haven’t yet run it, let’s check your system to verify the permissions of the standard packages: sudo /usr/libexec/repair_packages --verify --standard-pkgs --volume / In the above command, we used the repair_packages binary, which has not changed in awhile. We then feed that the –verify option and the…